PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16275_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 140aa    MW: 16433.7 Da    PI: 11.199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16275_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.2e-09114134122
          AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                  ++y+GVr+++ +g+W+AeIrdp
  RrC16275_p1 114 KKYRGVRQRP-WGKWAAEIRDP 134
                  59********.**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381238.8E-287140IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.101.3E-10115139IPR001471AP2/ERF domain
PROSITE profilePS5103212.391115140IPR001471AP2/ERF domain
PfamPF008471.6E-4115133IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-6115136IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEPEKNLVLP KIKFTEHKTN TTRTVPSHHH HQQPRLIRIS VTDPDATDSS SDEEEEHQRF  60
ASKRRRIKKF VNEVVLDSTA TGTTTTSTTQ IEPKRRRKRP VIIKPEPAPA PEYKKYRGVR  120
QRPWGKWAAE IRDPLRRVRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266KRRRI
29299PKRRRKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594117.12e-74PREDICTED: ethylene-responsive transcription factor CRF2
SwissprotQ9SUQ23e-48CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A078DY022e-74A0A078DY02_BRANA; BnaC07g38490D protein
TrEMBLA0A0D3DFR12e-74A0A0D3DFR1_BRAOL; Uncharacterized protein
STRINGBra019270.1-P2e-64(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-31cytokinin response factor 2